Episode #318 from 2:04:41

AI and biology

But how do we get that understanding? It's so incredibly difficult. I mean, you would have to... One promising direction, I'd love to get your opinion on this. I don't know if you're familiar with the work of DeepMind and AlphaFold with protein folding and so on. Do you think it's possible that that will give us some breakthroughs in biology trying to basically simulate and model the behavior of trivial biological systems as they become complex biological systems? I'm sure it will. The interesting thing to me about protein folding is that for a long time, my understanding, this is not what I work on, so I may have got this wrong, but my understanding is that you take the sequence of a protein and you try to fold it, and there are multiple ways in which it can fold. And to come up with the correct confirmation is not a very easy thing because you're doing it from first principles from a string of letters, which specify the string of amino acids. But what actually happens is when a protein is coming out of a ribosome, it's coming out of a charged tunnel and it's in a very specific environment which is going to force this to go there now and then this one to go there and this one to come like that. And so you're forcing a specific conformational set of changes onto it as it comes out of the ribosome.

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But how do we get that understanding? It's so incredibly difficult. I mean, you would have to... One promising direction, I'd love to get your opinion on this. I don't know if you're familiar with the work of DeepMind and AlphaFold with protein folding and so on. Do you think it's possible that that will give us some breakthroughs in biology trying to basically simulate and model the behavior of trivial biological systems as they become complex biological systems? I'm sure it will. The interesting thing to me about protein folding is that for a long time, my understanding, this is not what I work on, so I may have got this wrong, but my understanding is that you take the sequence of a protein and you try to fold it, and there are multiple ways in which it can fold. And to come up with the correct confirmation is not a very easy thing because you're doing it from first principles from a string of letters, which specify the string of amino acids. But what actually happens is when a protein is coming out of a ribosome, it's coming out of a charged tunnel and it's in a very specific environment which is going to force this to go there now and then this one to go there and this one to come like that. And so you're forcing a specific conformational set of changes onto it as it comes out of the ribosome.

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AI and biology chapter timestamp | Nick Lane: Origin of Life, Evolution, Aliens, Biology, and Consciousness | EpisodeIndex